swmmr - an R package to interface SWMM

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface

SUMMARY The R/Bioconductor package RamiGO is an R interface to AmiGO that enables visualization of Gene Ontology (GO) trees. Given a list of GO terms, RamiGO uses the AmiGO visualize API to import Graphviz-DOT format files into R, and export these either as images (SVG, PNG) or into Cytoscape for extended network analyses. RamiGO provides easy customization of annotation, highlighting of specif...

RGL: An R Interface to OpenGL

RGL: An R Interface to OpenGL

OpenGL is a cross-platform library for 3D rendering. In this paper I will describe RGL, an R package providing a simplified interface to it. The style of the interface follows that of the older S or R plotting functions, with some differences. In particular, it is possible for the user to manipulate objects on the screen, and programmatically to change the appearance or content of the

Runuran - An R Interface to UNU.RAN Library

Runuran is a wrapper to UNU.RAN (Universal Non-Uniform RANdom variate generators), a library for generating random variates for large classes of distributions. It also allows to compute quantiles (inverse cumulative distribution functions) of these distributions efficiently. In addition it can be used to compute (approximate) values of the density function or the distribution function. In order...

Cyrface: An interface from Cytoscape to R that provides a user interface to R packages

There is an increasing number of software packages to analyse biological experimental data in the R environment. In particular, Bioconductor, a repository of curated R packages, is one of the most comprehensive resources for bioinformatics and biostatistics. The use of these packages is increasing, but it requires a basic understanding of the R language, as well as the syntax of the specific pa...